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QS000077.0 - Predicted protein: similar to predicted protein in Populus trichocarpa
(High confidence)

(if you disagree with the automated annotation, please fill out the appropriate form.)

Putative Peptide - GO Term Annotation - Interpro Assignment - Best Blast Hits

Phylogenetic Profile

(click image to BLAST protein against species on the tree)


cDNA

AccessionQS000077.0
Length3449

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Sequence 
GGGGGATCCAAACAAAACCCAACAAAGCTAAAACCCTAAGAAAAACGTTCTCTGCTCTCC
CATTGAGAAAGATTGCGGCCACTGAAATCTCTAGCTTACAGGTGATTGCTGATTTGATAT
TGTGATGATATGACGACTTTTGCCAAACCAGAGAATGCTTTAAAGCGAGCTGAAGAGCTG
ATAAATGTTGGGCAGAAACAAAATGCCTTGCAAGCCCTTCATGACCTTATAACATCAAGG
AGGTATCGAGCATGGCAAAAGACTCTTGAAAGGATTATGTTTAAATATGTAGAGCTCTGT
GTTGACATGCGGAGGGGTAGGTTTGCCAAGGATGGTCTGATTCAATACCGCATTGTGTGT
CAGCAAGTGAATGTTAATTCTTTGGAGGAGGTGATAAAACACTTCATGCATCTGTCCACT
GAGAAAGCTGAGCAGGCTCGTAGTCAGGCAGAAGCCCTAGAAGAAGCTCTAGATGTAGAT
GACCTGGAAGCAGATAAAAGGCCAGAAGATTTGATGCTAAGTTATGTCAGTGGAGAGAAG
GGAAAGGATAGGTCTGATCGTGAACTTGTTACCCCTTGGTTCAAGTTTTTGTGGGAGACC
TATAGAACAGTGCTTGAAATCTTACGTAACAACTCAAAGTTGGAAGCACTTTATGCGATG
ACAGCACACCGGGCTTTCCAGTTTTGCAAGCAATACAAACGGACAACAGAGTTTCGTAGG
TTGTGTGAAATTATCAGGAATCATCTATCTAATCTTAACAAATACAGAGACCAAAGGGAC
CGACCTGACCTATCTGCACCTGAGAGCTTGCAGCTGTATCTTGATACAAGATTTGAACAG
CTAAAGATTGCTACTGAACTTGAACTGTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATT
CATGGATTGATGTGCATGGTTAAGAAAACCCCCAAGTCATCTTTGATGGTGGTTTATTAT
GCCAAGCTAACAGAAATTTTCTGGATCTCATCTAGCCATCTATATCATGCTTATGCGTGG
TTGAAGCTTTTTACCCTTCAGAAAAGCTTCAATAAGAATTTAAGTCAGAAGGATTTGCAA
TTGATAGCATCATCTGTTGTATTGGCTGCACTCTCAGTGCCGCCCTATACTCACAGACGC
GGTTCGTCCCATTTGGAACTTCAAAATGAGAAGGAACGCAACTTGAGGATGGCTAATCTT
ATAGGATTCAATCTTGATCCTAAAGTTGATGGTGGAGAAGTGCTATCACGGTCAAACATT
CTCTCAGAACTGGTGTTGAAAGGTGTATTGAGCTGTGCTACTCAGGAAGTAAAAGATCTT
TATCATCTACTGGAGCATGAGTTTCTGCCTCTGGATCTTGCATCAAAGATACAGCCCTTG
TTGGTTAAAATTTCAAAGCTTGGGGGTAAGCTTTCTTCAGCTTCCTCTGTTCATGAAGTT
CAACTGTCTCAATATGCTCCTGCCCTGGAAAAGCTTGCTACCTTGAGGTTGCTTCAGCAG
GTGTCTCGGGTGTATCAAACACTGAAAATTGAGAGTTTATCTCAGATGATCCCCTTTTTT
GATTTTCCCGTTGTTGAGAAGATCTCTGTAGATGCTGTTAAACATAATTTCATAGCTATG
AAAGTTGACCATATTAAGGGTGTTGTATTGTTTGGTAATTTGGGCCTTGAATCTGATGGC
TTCCAGGATCACTTGACAGTCTTTGCTGGTTCATTAGATAAAGCAAGGACCCTGATTTAT
CCACCTGTAAAGAAGGCATCAAAGCTAGGAGAAATGTTGCCTGGTTTGGCGGATCTTGTG
GATAAGGAACACAAGAGGCTTCTTGCTCGAAAATCAATCATTGAGAAAAGGAAGGAAGAG
CAAGAACTTCTACTTTTGGAAATGGAACGAAATGCAGAGTTGAAAAGGAGAAAGCAACAG
CAGATTGCTGAAGAGGAAGAGAAGAAGAGGCTTGCATCTGAGGTTGAAAAGAGGAAGAAT
CAAATGATCCTTGAGGAAATCAGAGACAAGGAGCTTGAGCAAGCAAAAGCTCTACTTGAG
GATGTTGGAAAGCAGCGCAAGAAGAAGATAAAGAAGTCGTTTTTAGATGGAGAAAATGTT
ACAAAGCAAGCTATAATGGAGATGGCCCTGAGTGAACAGCTGAGGGAGAGACAGGAAACA
GAGAAGAAATTACTAAAACTAGCTAAAACCATGGATCATTTAGAAAGAGCAAAAAGAGAA
GAGGCAGCTCCCTTGATTGAAGCTGCATTTCAGCAGCGTTTGGTGGAAGAGAAGGTGCTT
CATGAACGTGAGCAGCAGCTAGAGGTTGAGCTTAGCAGGCAGCACCATGATGGGGACCTC
AAGGAGAAGAATAGGTTGGCAAGGATGTTGGAGAATAAGACAATATTCCAGGGAAATGTG
GTGCATCGTCGGCAATCAGAGTTTGACCGACTTAGGGAGGAGAGAGACAGGCAAATCCAG
CAAATGCTTCAGGCCCGTCGGCAGGAGAGGGATGCTATTAGAAAGAAAATATTTTATGTG
CAGACTGAGGAGGAAAAACAGAGAAAGCTGCTGGAAGAGGAGGAAGCTCGCAAGCGGGAA
GAGGCTGAGAGGCAAAGGAAGATAGAAGAGGAACGCAGGGCAAAATTGGATGAGATTGCT
GAGAAGCAAAGGCAAAGAGAGCGGGAATTAGAGGAAAAAGAAAGGCAGAGGAGAGAAGCA
CTCTTGGGTAGATCAACTGACGGGCCTTCTAGGCCTTCTGAGCCTGTTGGTTCCCGCCCA
TCTGAGCCAGTAGCTACAGCTCCCGCTTGCTTGCAGCTGCAACTGGTGCTGGTGCTCCAC
CATCTGCTGGAAAATATGTACCTAGGTTCCGGAGACCTGAAGTCTCTGTGCAGGCACCTC
CTTCAGAACCAGATCGATGGAGCAGCAGCCGGCAGGATGATCGCACGTCCCAACCCAGTG
ATAGGTGGCGGAGTGATGACCGCAAGCCCTCTTTTGGTGCTGGTGGTGGCTCAAAGTCCA
CTTGGTCCTCATCTAGAGTCCCTCCACGTGGCGGTGGATCAGCACGCTGATCATAGAGGA
TCTTATTTGATTTGCATGAACAAAGGTCAATTTTGATTCCATCAACACATGGACGGTTTA
TTGCAAGCCAGAGAAAATAATCCCTGTGCTTTATTTTTAGCACCTCCAGACCTGGTTGAG
TTGTTTCATCTCTTTGTTTTTTCAATGTAGTTATCTTTCCCTCGCTGTTTTCATGTCAAG
GCAACCTACTGAAATATTTATTGTAATCTTGAAGCTTCAGACTTGATAGAGTTATCTATT
TTAATTATTATTTTCATCCTTATTTTCTTCTCTTTCTTATTGGGTTCGTATATTTCTGTA
TTATTTCATTTTATGTGCCATTGGAAAGAGTGAACTTCTTGYCAGCCATTTCTTGTAATT
TTATTAATATATATGGGAGAGGGAGATTT


Putative Peptide

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Accession QSP000077.0
Length 886
Sequence 
MTTFAKPENALKRAEELINVGQKQNALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM
RRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSQAEALEEALDVDDLE
ADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH
RAFQFCKQYKRTTEFRRLCEIIRNHLSNLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI
ATELELWQEAFRSVEDIHGLMCMVKKTPKSSLMVVYYAKLTEIFWISSSHLYHAYAWLKL
FTLQKSFNKNLSQKDLQLIASSVVLAALSVPPYTHRRGSSHLELQNEKERNLRMANLIGF
NLDPKVDGGEVLSRSNILSELVLKGVLSCATQEVKDLYHLLEHEFLPLDLASKIQPLLVK
ISKLGGKLSSASSVHEVQLSQYAPALEKLATLRLLQQVSRVYQTLKIESLSQMIPFFDFP
VVEKISVDAVKHNFIAMKVDHIKGVVLFGNLGLESDGFQDHLTVFAGSLDKARTLIYPPV
KKASKLGEMLPGLADLVDKEHKRLLARKSIIEKRKEEQELLLLEMERNAELKRRKQQQIA
EEEEKKRLASEVEKRKNQMILEEIRDKELEQAKALLEDVGKQRKKKIKKSFLDGENVTKQ
AIMEMALSEQLRERQETEKKLLKLAKTMDHLERAKREEAAPLIEAAFQQRLVEEKVLHER
EQQLEVELSRQHHDGDLKEKNRLARMLENKTIFQGNVVHRRQSEFDRLREERDRQIQQML
QARRQERDAIRKKIFYVQTEEEKQRKLLEEEEARKREEAERQRKIEEERRAKLDEIAEKQ
RQRERELEEKERQRREALLGRSTDGPSRPSEPVGSRPSEPVATAPA

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Putative Splice Variants

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Putative splice variants were computed by blasting the list of all proteins against itself and selecting partial matches with 100% identity.


QSP105074.0

Functional Annotation



GO Term Annotation
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AccessionTypeNameDefinitionEC
GO:0016020 cellular_component membrane Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
GO:0044424 cellular_component intracellular part Any constituent part of flagellum, a 20 nm diameter filament composed of subunits of flagellin driven passively at its base by a motor powered by the transmembrane proton potential. Examples of this component are found in bacterial species.
GO:0043234 cellular_component protein complex Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring outside the cell.
GO:0006412 biological_process translation The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO:0008135 molecular_function translation factor activity, nucleic acid binding OBSOLETE (was not defined before being made obsolete).


Interpro Assignment
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Interpro Accession Interpro Name Interpro Type DB DB accession DB name Description
IPR000717 Proteasome component (PCI) domain Domain PFAM PF01399 PF01399 PCI
IPR000717 Proteasome component (PCI) domain Domain SMART SM00088 SM00088 no description
No IPR unintegrated unintegrated PANTHER PTHR14005 PTHR14005 EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT
No IPR unintegrated unintegrated SUPERFAMILY SSF46785 SSF46785 Winged helix DNA-binding domain


Best Blast Hits
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Top hits against the nr database.

AccessionTitle
XP_002512475 gi|255542824|ref|XP_002512475.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] >gi|223548436|gb|EEF49927.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
XP_002283093 gi|225450669|ref|XP_002283093.1| PREDICTED: hypothetical protein [Vitis vinifera]
CBI39558 gi|296089739|emb|CBI39558.3| unnamed protein product [Vitis vinifera]
XP_002330181 gi|224123680|ref|XP_002330181.1| predicted protein [Populus trichocarpa] >gi|222871637|gb|EEF08768.1| predicted protein [Populus trichocarpa]
XP_002319496 gi|224125084|ref|XP_002319496.1| predicted protein [Populus trichocarpa] >gi|222857872|gb|EEE95419.1| predicted protein [Populus trichocarpa]
XP_002874691 gi|297813615|ref|XP_002874691.1| hypothetical protein ARALYDRAFT_489971 [Arabidopsis lyrata subsp. lyrata] >gi|297320528|gb|EFH50950.1| hypothetical protein ARALYDRAFT_489971 [Arabidopsis lyrata subsp. lyrata]
NP_192881 gi|15233360|ref|NP_192881.1| EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A); translation initiation factor [Arabidopsis thaliana] >gi|23396624|sp|Q9LD55.1|EIF3A_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=eIF-3-theta; AltName: Full=p114 >gi|12407749|gb|AAG53635.1|AF291711_1 initiation factor 3a [Arabidopsis thaliana] >gi|7267841|emb|CAB81243.1| putative protein [Arabidopsis thaliana] >gi|7321039|emb|CAB82147.1| putative protein [Arabidopsis thaliana] >gi|110741456|dbj|BAE98688.1| hypothetical protein [Arabidopsis thaliana]
Q40554 gi|6685538|sp|Q40554.1|EIF3A_TOBAC RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=PNLA-35; AltName: Full=eIF-3-theta >gi|506471|emb|CAA56189.1| unnamed protein product [Nicotiana tabacum]
BAD18434 gi|47076999|dbj|BAD18434.1| unnamed protein product [Homo sapiens]